Containers

Reference list of Apptainer containers available on NowWhat.

Apptainer container modules live in /software/modules/containers. Loading one of these modules adds wrapper commands to PATH and exports container metadata variables.

ModulePythonRConda packagesPip packagesR packagesDescriptionStatus
apptainer-bioconductor/3.22-4.5.2--129Bioconductor 3.22 container for R-based bioinformatics, genomics, and reproducible package workflows.
apptainer-bioconductor/3.23-4.6.0--128
apptainer-bioconductor/devel-4.6.0--128Development Bioconductor container for testing upcoming bioinformatics packages and workflows.
apptainer-bioconductor/latest-4.6.0--605Latest Bioconductor container for current R bioinformatics workflows and package testing.
apptainer-cuda/13.1.1-----CUDA runtime container for GPU-enabled builds, diagnostics, and applications that need NVIDIA libraries.
apptainer-julia/1.12-----Julia container for numerical computing, simulation, data analysis, and Julia package workflows.
apptainer-jupyter/latest3.13.12----Jupyter container for interactive notebooks, remote analysis sessions, and Python-based exploratory work.
apptainer-napari-xpra/latest3.11.15----Napari and Xpra container for remote graphical image analysis and interactive visualization workflows.
apptainer-python/3.93.9.25----Python 3.9 base container for legacy Python applications and reproducible package environments.
apptainer-python/3.103.10.20----Python 3.10 base container for stable Python workflows and project-specific package installs.
apptainer-python/3.113.11.15----Python 3.11 base container for modern Python applications, scripting, and scientific computing.
apptainer-python/3.123.12.13----Python 3.12 base container for current Python workflows and package compatibility testing.
apptainer-python/3.133.13.12----Python 3.13 base container for recent Python workflows and forward-looking compatibility checks.
apptainer-python/3.143.14.3----Python 3.14 base container for latest Python testing, development, and experimental workflows.
apptainer-pytorch/25.033.12.3----NVIDIA PyTorch container for GPU deep learning, model training, inference, and tensor workflows.
apptainer-r/4.1-4.1.3--31
apptainer-r/4.2-4.2.3--31
apptainer-r/4.3-4.3.3--31
apptainer-r/4.4-4.4.3--31
apptainer-r/4.5-4.5.3--31
apptainer-r/4.6-4.6.0--31
apptainer-rig/latest-4.6.0--30
apptainer-rstudio-server/4.5-4.5.3--31RStudio Server container for browser-based R 4.5 interactive analysis sessions.
apptainer-rstudio-server/4.6-4.6.0--31RStudio Server container for browser-based R 4.6 interactive analysis sessions.
apptainer-tensorflow/latest-gpu3.11.15----GPU-enabled TensorFlow container for deep learning training, inference, and neural network workflows.
apptainer-tidyverse/4.5-4.5.3--184Tidyverse container for R data wrangling, visualization, reporting, and statistical analysis.

Basic Usage

module load apptainer-python/3.14
python --version

Use module show module/version to inspect the exact wrapper path, image path, and exported variables.

Packages

Each section lists Python pip packages and R packages found in the container inventory.

apptainer-bioconductor/3.22

  • Python: -
  • R: 4.5.2
  • Pip packages: -
  • R packages: 129
  • Description: Bioconductor 3.22 container for R-based bioinformatics, genomics, and reproducible package workflows.
Pip packages

No packages found in this inventory.

R packages
PackageVersion
askpass1.2.1
base4.5.2
base64enc0.1-3
BiocManager1.30.27
BiocVersion3.22.0
boot1.3-32
brew1.0-10
brio1.1.5
bslib0.9.0
cachem1.1.0
callr3.7.6
class7.3-23
cli3.6.5
clipr0.8.0
cluster2.1.8.1
codetools0.2-20
commonmark2.0.0
compiler4.5.2
cpp110.5.2
crayon1.5.3
credentials2.0.3
curl7.0.0
datasets4.5.2
desc1.4.3
devtools2.4.6
diffobj0.3.6
digest0.6.39
docopt0.7.2
downlit0.4.5
ellipsis0.3.2
evaluate1.0.5
fansi1.0.7
fastmap1.2.0
fontawesome0.5.3
foreign0.8-90
fs1.6.6
gert2.2.0
gh1.5.0
gitcreds0.1.2
glue1.8.0
graphics4.5.2
grDevices4.5.2
grid4.5.2
highr0.11
htmltools0.5.8.1
htmlwidgets1.6.4
httpuv1.6.16
httr21.2.1
ini0.3.1
jquerylib0.1.4
jsonlite2.0.0
KernSmooth2.23-26
knitr1.50
later1.4.4
lattice0.22-7
lifecycle1.0.4
littler0.3.21
magrittr2.0.4
MASS7.3-65
Matrix1.7-4
memoise2.0.1
methods4.5.2
mgcv1.9-4
mime0.13
miniUI0.1.2
nlme3.1-168
nnet7.3-20
openssl2.3.4
otel0.2.0
parallel4.5.2
pillar1.11.1
pkgbuild1.4.8
pkgconfig2.0.3
pkgdown2.2.0
pkgload1.4.1
praise1.0.0
preprocessCore1.72.0
prettyunits1.2.0
processx3.8.6
profvis0.4.0
promises1.5.0
ps1.9.1
purrr1.2.0
R62.6.1
ragg1.5.0
rappdirs0.3.3
rcmdcheck1.4.0
Rcpp1.1.0
remotes2.5.0
rlang1.1.6
rmarkdown2.30
roxygen27.3.3
rpart4.1.24
rprojroot2.1.1
rstudioapi0.17.1
rversions3.0.0
sass0.4.10
sessioninfo1.2.3
shiny1.11.1
sourcetools0.1.7-1
spatial7.3-18
splines4.5.2
stats4.5.2
stats44.5.2
stringi1.8.7
stringr1.6.0
survival3.8-3
sys3.4.3
systemfonts1.3.1
tcltk4.5.2
testthat3.3.1
textshaping1.0.4
tibble3.3.0
tinytex0.58
tools4.5.2
urlchecker1.0.1
usethis3.2.1
utf81.2.6
utils4.5.2
vctrs0.6.5
waldo0.6.2
whisker0.4.1
withr3.0.2
xfun0.54
xml21.5.1
xopen1.0.1
xtable1.8-4
yaml2.3.11
zip2.3.3

apptainer-bioconductor/3.23

  • Python: -
  • R: 4.6.0
  • Pip packages: -
  • R packages: 128
  • Description: Not described yet.
Pip packages

No packages found in this inventory.

R packages
PackageVersion
askpass1.2.1
base4.6.0
base64enc0.1-6
BiocManager1.30.27
BiocVersion3.23.1
boot1.3-32
brew1.0-10
brio1.1.5
bslib0.10.0
cachem1.1.0
callr3.7.6
class7.3-23
cli3.6.6
clipr0.8.0
cluster2.1.8.2
codetools0.2-20
commonmark2.0.0
compiler4.6.0
cpp110.5.5
crayon1.5.3
credentials2.0.3
curl7.1.0
datasets4.6.0
desc1.4.3
devtools2.5.2
diffobj0.3.6
digest0.6.39
docopt0.7.2
downlit0.4.5
ellipsis0.3.3
evaluate1.0.5
fansi1.0.7
fastmap1.2.0
fontawesome0.5.3
foreign0.8-91
fs2.1.0
gert2.3.1
gh1.5.0
gitcreds0.1.2
glue1.8.1
graphics4.6.0
grDevices4.6.0
grid4.6.0
highr0.12
htmltools0.5.9
htmlwidgets1.6.4
httpuv1.6.17
httr21.2.2
ini0.3.1
jquerylib0.1.4
jsonlite2.0.0
KernSmooth2.23-26
knitr1.51
later1.4.8
lattice0.22-9
lifecycle1.0.5
littler0.3.23
magrittr2.0.5
MASS7.3-65
Matrix1.7-5
memoise2.0.1
methods4.6.0
mgcv1.9-4
mime0.13
miniUI0.1.2
nlme3.1-169
nnet7.3-20
openssl2.4.0
otel0.2.0
pak0.9.5
parallel4.6.0
pillar1.11.1
pkgbuild1.4.8
pkgconfig2.0.3
pkgdown2.2.0
pkgload1.5.2
praise1.0.0
preprocessCore1.74.0
prettyunits1.2.0
processx3.9.0
profvis0.4.0
promises1.5.0
ps1.9.3
purrr1.2.2
R62.6.1
ragg1.5.2
rappdirs0.3.4
rcmdcheck1.4.0
Rcpp1.1.1-1.1
rlang1.2.0
rmarkdown2.31
roxygen28.0.0
rpart4.1.27
rprojroot2.1.1
rstudioapi0.18.0
rversions3.0.0
sass0.4.10
sessioninfo1.2.3
shiny1.13.0
sourcetools0.1.7-2
spatial7.3-18
splines4.6.0
stats4.6.0
stats44.6.0
stringi1.8.7
survival3.8-6
sys3.4.3
systemfonts1.3.2
tcltk4.6.0
testthat3.3.2
textshaping1.0.5
tibble3.3.1
tinytex0.59
tools4.6.0
urlchecker1.0.1
usethis3.2.1
utf81.2.6
utils4.6.0
vctrs0.7.3
waldo0.6.2
whisker0.4.1
withr3.0.2
xfun0.57
xml21.5.2
xopen1.0.1
xtable1.8-8
yaml2.3.12
zip2.3.3

apptainer-bioconductor/devel

  • Python: -
  • R: 4.6.0
  • Pip packages: -
  • R packages: 128
  • Description: Development Bioconductor container for testing upcoming bioinformatics packages and workflows.
Pip packages

No packages found in this inventory.

R packages
PackageVersion
askpass1.2.1
base4.6.0
base64enc0.1-6
BiocManager1.30.27
BiocVersion3.24.0
boot1.3-32
brew1.0-10
brio1.1.5
bslib0.10.0
cachem1.1.0
callr3.7.6
class7.3-23
cli3.6.6
clipr0.8.0
cluster2.1.8.2
codetools0.2-20
commonmark2.0.0
compiler4.6.0
cpp110.5.5
crayon1.5.3
credentials2.0.3
curl7.1.0
datasets4.6.0
desc1.4.3
devtools2.5.2
diffobj0.3.6
digest0.6.39
docopt0.7.2
downlit0.4.5
ellipsis0.3.3
evaluate1.0.5
fansi1.0.7
fastmap1.2.0
fontawesome0.5.3
foreign0.8-91
fs2.1.0
gert2.3.1
gh1.5.0
gitcreds0.1.2
glue1.8.1
graphics4.6.0
grDevices4.6.0
grid4.6.0
highr0.12
htmltools0.5.9
htmlwidgets1.6.4
httpuv1.6.17
httr21.2.2
ini0.3.1
jquerylib0.1.4
jsonlite2.0.0
KernSmooth2.23-26
knitr1.51
later1.4.8
lattice0.22-9
lifecycle1.0.5
littler0.3.23
magrittr2.0.5
MASS7.3-65
Matrix1.7-5
memoise2.0.1
methods4.6.0
mgcv1.9-4
mime0.13
miniUI0.1.2
nlme3.1-169
nnet7.3-20
openssl2.4.0
otel0.2.0
pak0.9.5
parallel4.6.0
pillar1.11.1
pkgbuild1.4.8
pkgconfig2.0.3
pkgdown2.2.0
pkgload1.5.2
praise1.0.0
preprocessCore1.75.0
prettyunits1.2.0
processx3.9.0
profvis0.4.0
promises1.5.0
ps1.9.3
purrr1.2.2
R62.6.1
ragg1.5.2
rappdirs0.3.4
rcmdcheck1.4.0
Rcpp1.1.1-1.1
rlang1.2.0
rmarkdown2.31
roxygen28.0.0
rpart4.1.27
rprojroot2.1.1
rstudioapi0.18.0
rversions3.0.0
sass0.4.10
sessioninfo1.2.3
shiny1.13.0
sourcetools0.1.7-2
spatial7.3-18
splines4.6.0
stats4.6.0
stats44.6.0
stringi1.8.7
survival3.8-6
sys3.4.3
systemfonts1.3.2
tcltk4.6.0
testthat3.3.2
textshaping1.0.5
tibble3.3.1
tinytex0.59
tools4.6.0
urlchecker1.0.1
usethis3.2.1
utf81.2.6
utils4.6.0
vctrs0.7.3
waldo0.6.2
whisker0.4.1
withr3.0.2
xfun0.57
xml21.5.2
xopen1.0.1
xtable1.8-8
yaml2.3.12
zip2.3.3

apptainer-bioconductor/latest

  • Python: -
  • R: 4.6.0
  • Pip packages: -
  • R packages: 605
  • Description: Latest Bioconductor container for current R bioinformatics workflows and package testing.
Pip packages

No packages found in this inventory.

R packages
PackageVersion
abind1.4-8
affy1.90.0
affydata1.59.0
affyio1.82.0
affyPLM1.88.0
airway1.31.0
alabaster.base1.12.0
alabaster.matrix1.12.0
alabaster.ranges1.12.0
alabaster.sce1.12.0
alabaster.schemas1.12.0
alabaster.se1.12.0
ALL1.53.0
annotate1.90.0
AnnotationDbi1.74.0
AnnotationFilter1.36.0
AnnotationForge1.54.0
AnnotationHub4.2.0
archive1.1.13
arrow24.0.0
asciicast2.3.1
AsioHeaders1.30.2-1
askpass1.2.1
assertthat0.2.1
assorthead1.6.0
av0.9.6
aws.s30.3.22
aws.signature0.6.0
backports1.5.1
base4.6.0
base642.0.2
base64enc0.1-6
base64url1.4
basilisk1.24.0
batchtools0.9.18
BBmisc1.13.1
beachmat2.28.0
beanplot1.3.1
bench1.1.4
BH1.90.0-1
bigD0.3.1
Biobase2.72.0
Bioc.gff1.2.0
BiocBaseUtils1.13.0
BiocFileCache3.2.0
BiocGenerics0.58.0
BiocIO1.22.0
biocmake1.4.0
BiocManager1.30.27
BiocParallel1.45.0
BiocStyle2.40.0
BiocVersion3.23.1
biomaRt2.68.0
Biostrings2.80.0
biovizBase1.60.0
bit4.6.0
bit644.8.0
bitops1.0-9
blob1.3.0
bookdown0.46
boot1.3-32
brand.yml0.1.0
brew1.0-10
brio1.1.5
broom1.0.12
BSgenome1.80.0
BSgenome.Celegans.UCSC.ce111.4.2
BSgenome.Celegans.UCSC.ce21.4.0
BSgenome.Dmelanogaster.UCSC.dm31.4.0
BSgenome.Hsapiens.NCBI.GRCh381.3.1000
BSgenome.Hsapiens.UCSC.hg181.3.1000
BSgenome.Hsapiens.UCSC.hg191.4.3
BSgenome.Hsapiens.UCSC.hg381.4.5
BSgenome.Mmusculus.UCSC.mm101.4.3
BSgenome.Scerevisiae.UCSC.sacCer21.4.0
bsicons0.1.2
bslib0.10.0
bumphunter1.54.0
BumpyMatrix1.20.0
cachem1.1.0
Cairo1.7-0
callr3.7.6
car3.1-5
carData3.0-6
carrier0.3.0.4
cellranger1.1.0
checkmate2.3.4
chromote0.5.1
cigarillo1.2.0
circlize0.4.18
class7.3-23
classInt0.4-11
cleanrmd0.1.1
cli3.6.6
clipr0.8.0
clue0.3-68
cluster2.1.8.2
codetools0.2-20
colorspace2.1-2
commonmark2.0.0
compiler4.6.0
ComplexHeatmap2.28.0
conflicted1.2.0
connectcreds0.2.0
coro1.1.0
corrplot0.95
covr3.6.5
cowplot1.2.0
cpp110.5.4
crayon1.5.3
credentials2.0.3
crosstalk1.2.2
curatedTCGAData1.33.2
curl7.1.0
cytolib2.24.0
data.table1.18.2.1
datasets4.6.0
DBI1.3.0
DBItest1.8.2
dbplyr2.5.2
debugme1.2.0
decor1.0.2
DelayedArray0.38.0
DelayedMatrixStats1.34.0
deldir2.0-4
Deriv4.2.0
desc1.4.3
DESeq21.52.0
devtools2.5.1
DEXSeq1.58.0
DiagrammeR1.0.12
dichromat2.0-0.1
diffobj0.3.6
diffviewer0.1.2
digest0.6.39
dir.expiry1.20.0
disposables1.0.3
DNAcopy1.86.0
doBy4.7.1
docopt0.7.2
doParallel1.0.17
doRNG1.8.6.3
downlit0.4.5
dplyr1.2.1
dqrng0.4.1
DropletTestFiles1.21.0
DropletUtils1.32.0
drosophila2probe2.18.0
DT0.34.0
dtplyr1.3.3
dygraphs1.1.1.6
DynDoc1.90.0
e10711.7-17
edgeR4.10.0
ellipsis0.3.3
EnsDb.Hsapiens.v752.99.0
ensembldb2.36.0
evaluate1.0.5
exactRankTests0.8-36
ExperimentHub3.2.0
fansi1.0.7
farver2.1.2
fastmap1.2.0
FDb.UCSC.tRNAs1.0.1
ff4.5.2
filehash2.4-6
filelock1.0.3
flowClust3.50.0
flowCore2.24.0
foghorn1.6.1
fontawesome0.5.3
forcats1.0.1
foreach1.5.2
forecast9.0.2
foreign0.8-91
formatR1.14
formattable0.2.1
Formula1.2-5
fracdiff1.5-4
fs2.1.0
futile.logger1.4.9
futile.options1.0.1
future1.70.0
gapminder1.0.1
gargle1.6.1
gcrma2.84.0
genefilter1.94.0
geneplotter1.90.0
generics0.1.4
GenomeInfoDb1.48.0
GenomeInfoDbData1.2.15
GenomicAlignments1.48.0
GenomicDataCommons1.36.0
GenomicFeatures1.64.0
GenomicRanges1.64.0
GEOquery2.80.0
gert2.3.1
GetoptLong1.1.1
getPass0.2-4
ggplot24.0.3
ggpubr0.6.3
ggrepel0.9.8
ggsci5.0.0
ggsignif0.6.4
ggtext0.1.2
gh1.5.0
gifski1.32.0-2
git2r0.36.2
gitcreds0.1.2
GlobalOptions0.1.4
globals0.19.1
glue1.8.1
GO.db3.23.1
golubEsets1.53.0
googleAuthR2.0.2.1
googleCloudStorageR0.7.0
googledrive2.1.2
googlesheets41.1.2
graph1.90.0
graphics4.6.0
grDevices4.6.0
grid4.6.0
gridExtra2.3
gridSVG1.7-7
gridtext0.1.6
gt1.3.0
gtable0.3.6
gtools3.9.5
Gviz1.56.0
gypsum1.8.0
h5mread1.4.0
h5vcData2.31.0
haven2.5.5
HDF5Array1.40.0
here1.0.2
hgu133aprobe2.18.0
hgu133plus2.db3.13.0
hgu95av2.db3.13.0
hgu95av2cdf2.18.0
hgu95av2probe2.18.0
highr0.12
Hmisc5.2-5
hms1.1.4
htmlTable2.5.0
htmltools0.5.9
htmlwidgets1.6.4
httpuv1.6.17
httr1.4.8
httr21.2.2
humanStemCell0.51.0
hunspell3.0.6
hwriter1.3.2.1
ids1.0.1
igraph2.3.0
IlluminaHumanMethylation450kanno.ilmn12.hg190.6.1
illuminaio0.54.0
impute1.86.0
ini0.3.1
inline0.3.21
interp1.1-6
IRanges2.46.0
IRdisplay1.1
isoband0.3.0
iterators1.0.14
jose2.0.0
jpeg0.1-11
jquerylib0.1.4
jsonlite2.0.0
jsonvalidate1.5.0
juicyjuice0.1.0
JuliaCall0.17.6
katex1.5.0
KEGGgraph1.72.0
KEGGREST1.52.0
KernSmooth2.23-26
keyring1.4.1
knitr1.51
labeling0.4.3
Lahman14.0-0
lambda.r1.2.4
later1.4.8
lattice0.22-9
latticeExtra0.6-31
lazyeval0.2.3
lifecycle1.0.5
limma3.68.0
lintr3.3.0-1
listenv0.10.1
listviewer4.0.0
litedown0.9
littler0.3.23
lme42.0-1
lmtest0.9-40
lobstr1.2.1
locfit1.5-9.12
lpSolve5.6.23
lubridate1.9.5
maftools2.28.0
magick2.9.1
magrittr2.0.5
MALDIquant1.22.3
markdown2.0
MASS7.3-65
MassSpecWavelet1.78.0
mathjaxr2.0-0
Matrix1.7-5
MatrixGenerics1.24.0
MatrixModels0.5-4
matrixStats1.5.0
maxstat0.7-26
mclust6.1.2
memoise2.0.1
MetaboCoreUtils1.20.0
methods4.6.0
mgcv1.9-4
microbenchmark1.5.0
microRNA1.70.0
mime0.13
minfi1.58.0
miniUI0.1.2
minqa1.2.8
mirai2.6.1
miRBaseVersions.db1.1.0
miRNAmeConverter1.40.0
mockery0.4.5
modelr0.1.11
MsCoreUtils1.24.0
MSnbase2.37.0
MultiAssayExperiment1.38.0
multtest2.68.0
mvtnorm1.3-7
mzID1.50.0
mzR2.46.0
nanoarrow0.8.0
nanonext1.8.2
nanotime0.3.14
ncdf41.24
nlme3.1-169
nloptr2.2.1
nnet7.3-20
nor1mix1.3-3
numDeriv2016.8-1.1
nycflights131.0.2
odbc1.6.4.1
openssl2.4.0
org.At.tair.db3.22.0
org.Hs.eg.db3.23.1
org.Mm.eg.db3.23.0
org.Sc.sgd.db3.22.0
oskeyring0.1.7
otel0.2.0
otelsdk0.2.4
packrat0.9.3
pak0.9.5
palmerpenguins0.1.1
parallel4.6.0
parallelly1.47.0
pasillaBamSubset0.49.0
patchwork1.3.2
patrick0.3.1
paws.common0.8.9
pbkrtest0.5.5
pcaMethods2.4.0
pdftools3.8.0
pheatmap1.0.13
pillar1.11.1
pingr2.0.5
pkgbuild1.4.8
pkgcache2.2.5
pkgconfig2.0.3
pkgdepends0.9.1
pkgdown2.2.0
pkgKitten0.2.4
pkgload1.5.2
pkgsearch3.1.5
PKI0.1-15
plotly4.12.0
plyr1.8.9
png0.1-9
polynom1.4-1
praise1.0.0
preprocessCore1.74.0
prettyunits1.2.0
processx3.9.0
profmem0.7.0
profvis0.4.0
progress1.2.3
promises1.5.0
ProtGenerics1.44.0
proxy0.4-29
ps1.9.3
PSMatch1.16.0
PTMods1.0.0
purrr1.2.2
pwalign1.8.0
QFeatures1.22.0
qpdf1.4.1
qs20.2.0
quadprog1.5-8
quantreg6.1
quarto1.5.1
R.cache0.17.0
R.devices2.17.3
R.methodsS31.8.2
R.oo1.27.1
R.rsp0.46.0
R.utils2.13.0
R62.6.1
ragg1.5.2
RaggedExperiment1.36.0
rappdirs0.3.4
rbenchmark1.0.0
rbibutils2.4.1
rcmdcheck1.4.0
RColorBrewer1.1-3
Rcpp1.1.1-1.1
RcppArmadillo15.2.6-1
RcppCCTZ0.2.14
RcppDate0.0.6
RcppEigen0.3.4.0.2
RcppParallel5.1.11-2
RcppTOML0.2.3
RCurl1.98-1.18
Rdpack2.6.6
reactable0.4.5
reactlog1.1.1
reactome.db1.96.0
reactR0.6.1
readr2.2.0
readxl1.4.5
reformulas0.4.4
rematch2.0.0
rematch22.1.2
remotes2.5.0
rentrez1.2.4
renv1.2.2
repr1.1.7
reprex2.1.1
repurrrsive1.1.0
reshape0.8.10
reshape21.4.5
restfulr0.0.16
reticulate1.46.0
rex1.2.2
rgl1.3.36
Rgraphviz2.56.0
rhdf52.56.0
rhdf5filters1.24.0
Rhdf5lib2.0.0
Rhtslib3.8.0
rjson0.2.23
rjsoncons1.3.2
RJSONIO2.0.0
rlang1.2.0
rlecuyer0.3-8
RMariaDB1.3.5
rmarkdown2.31
RNAseqData.HNRNPC.bam.chr140.49.0
rngtools1.5.2
roxygen27.3.3
rpart4.1.27
RPostgres1.4.10
RPostgreSQL0.7-8
rprojroot2.1.1
RProtoBufLib2.24.0
Rsamtools2.28.0
rsconnect1.8.0
rsolr0.0.13
RSpectra0.16-2
RSQLite2.4.6
rstatix0.7.3
rstudioapi0.18.0
rsvg2.7.0
rsyslog1.0.3
RTCGAToolbox2.42.0
rticles0.27
rtracklayer1.72.0
Rtsne0.17
RUnit0.4.33.1
rversions3.0.0
rvest1.0.5
s21.1.9
S4Arrays1.12.0
S4Vectors0.50.0
S70.2.2
sass0.4.10
scales1.4.0
scrime1.3.7
scRNAseq2.25.0
scuttle1.22.0
secretbase1.2.1
selectr0.5-1
Seqinfo1.2.0
sessioninfo1.2.3
sf1.1-0
shape1.4.6.1
shiny1.13.0
ShortRead1.70.0
showtext0.9-8
showtextdb3.0
siggenes1.86.0
simplermarkdown0.0.6
SingleCellExperiment1.34.0
sitmo2.0.2
snow0.4-4
snowflakeauth0.2.2
SNPlocs.Hsapiens.dbSNP144.GRCh380.99.20
sodium1.4.0
sourcetools0.1.7-2
SparseArray1.12.0
SparseM1.84-2
sparseMatrixStats1.24.0
spatial7.3-18
Spectra1.22.0
spelling2.3.2
splines4.6.0
statmod1.5.1
stats4.6.0
stats44.6.0
stringfish0.19.0
stringi1.8.7
stringr1.6.0
styler1.11.0
SummarizedExperiment1.42.0
survival3.8-6
survminer0.5.2
svglite2.2.2
sys3.4.3
sysfonts0.8.9
systemfonts1.3.2
targets1.12.0
TCGAutils1.32.0
tcltk4.6.0
TENxBrainData1.31.0
TENxIO1.14.0
tesseract5.2.5
testit0.18
testthat3.3.2
textshaping1.0.5
thematic0.1.8
tibble3.3.1
tidyr1.3.2
tidyselect1.2.1
tidyverse2.0.0
tikzDevice0.12.6
timechange0.4.0
timeDate4052.112
tinytest1.4.3
tinytex0.59
tools4.6.0
TxDb.Athaliana.BioMart.plantsmart510.99.0
TxDb.Celegans.UCSC.ce11.ensGene3.15.0
TxDb.Dmelanogaster.UCSC.dm3.ensGene3.2.2
TxDb.Hsapiens.UCSC.hg18.knownGene3.2.2
TxDb.Hsapiens.UCSC.hg19.knownGene3.22.1
TxDb.Hsapiens.UCSC.hg19.lincRNAsTranscripts3.2.2
TxDb.Hsapiens.UCSC.hg38.knownGene3.22.0
TxDb.Mmusculus.UCSC.mm10.knownGene3.10.0
txdbmaker1.8.0
tzdb0.5.0
UCSC.utils1.8.0
unitizer1.4.23
units1.0-1
unix1.6.0
UpSetR1.4.0
urca1.3-4
urlchecker1.0.1
usethis3.2.1
utf81.2.6
utils4.6.0
uuid1.2-2
V88.2.0
VariantAnnotation1.58.0
vctrs0.7.3
vdiffr1.0.9
vembedr0.1.5
viridisLite0.4.3
visNetwork2.1.4
vroom1.7.1
vsn3.80.0
waldo0.6.2
watcher0.1.5
webfakes1.4.1
webp1.3.0
webshot0.5.5
websocket1.4.4
webutils1.2.2
whisker0.4.1
whoami1.3.0
withr3.0.2
wk0.9.5
xfun0.57
XML3.99-0.23
xml21.5.2
xmlparsedata1.0.5
xopen1.0.1
xslt1.5.1
xtable1.8-8
xts0.14.2
XVector0.52.0
yaml2.3.12
zeallot0.2.0
zellkonverter1.21.2
zip2.3.3
zoo1.8-15

apptainer-cuda/13.1.1

  • Python: -
  • R: -
  • Pip packages: -
  • R packages: -
  • Description: CUDA runtime container for GPU-enabled builds, diagnostics, and applications that need NVIDIA libraries.
Pip packages

No packages found in this inventory.

R packages

No packages found in this inventory.

apptainer-julia/1.12

  • Python: -
  • R: -
  • Pip packages: -
  • R packages: -
  • Description: Julia container for numerical computing, simulation, data analysis, and Julia package workflows.
Pip packages

No packages found in this inventory.

R packages

No packages found in this inventory.

apptainer-jupyter/latest

  • Python: 3.13.12
  • R: -
  • Pip packages: -
  • R packages: -
  • Description: Jupyter container for interactive notebooks, remote analysis sessions, and Python-based exploratory work.
Pip packages

No packages found in this inventory.

R packages

No packages found in this inventory.

apptainer-napari-xpra/latest

  • Python: 3.11.15
  • R: -
  • Pip packages: -
  • R packages: -
  • Description: Napari and Xpra container for remote graphical image analysis and interactive visualization workflows.
Pip packages

No packages found in this inventory.

R packages

No packages found in this inventory.

apptainer-python/3.9

  • Python: 3.9.25
  • R: -
  • Pip packages: -
  • R packages: -
  • Description: Python 3.9 base container for legacy Python applications and reproducible package environments.
Pip packages

No packages found in this inventory.

R packages

No packages found in this inventory.

apptainer-python/3.10

  • Python: 3.10.20
  • R: -
  • Pip packages: -
  • R packages: -
  • Description: Python 3.10 base container for stable Python workflows and project-specific package installs.
Pip packages

No packages found in this inventory.

R packages

No packages found in this inventory.

apptainer-python/3.11

  • Python: 3.11.15
  • R: -
  • Pip packages: -
  • R packages: -
  • Description: Python 3.11 base container for modern Python applications, scripting, and scientific computing.
Pip packages

No packages found in this inventory.

R packages

No packages found in this inventory.

apptainer-python/3.12

  • Python: 3.12.13
  • R: -
  • Pip packages: -
  • R packages: -
  • Description: Python 3.12 base container for current Python workflows and package compatibility testing.
Pip packages

No packages found in this inventory.

R packages

No packages found in this inventory.

apptainer-python/3.13

  • Python: 3.13.12
  • R: -
  • Pip packages: -
  • R packages: -
  • Description: Python 3.13 base container for recent Python workflows and forward-looking compatibility checks.
Pip packages

No packages found in this inventory.

R packages

No packages found in this inventory.

apptainer-python/3.14

  • Python: 3.14.3
  • R: -
  • Pip packages: -
  • R packages: -
  • Description: Python 3.14 base container for latest Python testing, development, and experimental workflows.
Pip packages

No packages found in this inventory.

R packages

No packages found in this inventory.

apptainer-pytorch/25.03

  • Python: 3.12.3
  • R: -
  • Pip packages: -
  • R packages: -
  • Description: NVIDIA PyTorch container for GPU deep learning, model training, inference, and tensor workflows.
Pip packages

No packages found in this inventory.

R packages

No packages found in this inventory.

apptainer-r/4.1

  • Python: -
  • R: 4.1.3
  • Pip packages: -
  • R packages: 31
  • Description: Not described yet.
Pip packages

No packages found in this inventory.

R packages
PackageVersion
base4.1.3
boot1.3-28
class7.3-20
cluster2.1.2
codetools0.2-18
compiler4.1.3
datasets4.1.3
docopt0.7.1
foreign0.8-82
graphics4.1.3
grDevices4.1.3
grid4.1.3
KernSmooth2.23-20
lattice0.20-45
littler0.3.15
MASS7.3-55
Matrix1.4-0
methods4.1.3
mgcv1.8-39
nlme3.1-155
nnet7.3-17
parallel4.1.3
rpart4.1.16
spatial7.3-15
splines4.1.3
stats4.1.3
stats44.1.3
survival3.2-13
tcltk4.1.3
tools4.1.3
utils4.1.3

apptainer-r/4.2

  • Python: -
  • R: 4.2.3
  • Pip packages: -
  • R packages: 31
  • Description: Not described yet.
Pip packages

No packages found in this inventory.

R packages
PackageVersion
base4.2.3
boot1.3-28.1
class7.3-21
cluster2.1.4
codetools0.2-19
compiler4.2.3
datasets4.2.3
docopt0.7.1
foreign0.8-84
graphics4.2.3
grDevices4.2.3
grid4.2.3
KernSmooth2.23-20
lattice0.20-45
littler0.3.18
MASS7.3-58.2
Matrix1.5-3
methods4.2.3
mgcv1.8-42
nlme3.1-162
nnet7.3-18
parallel4.2.3
rpart4.1.19
spatial7.3-16
splines4.2.3
stats4.2.3
stats44.2.3
survival3.5-3
tcltk4.2.3
tools4.2.3
utils4.2.3

apptainer-r/4.3

  • Python: -
  • R: 4.3.3
  • Pip packages: -
  • R packages: 31
  • Description: Not described yet.
Pip packages

No packages found in this inventory.

R packages
PackageVersion
base4.3.3
boot1.3-29
class7.3-22
cluster2.1.6
codetools0.2-19
compiler4.3.3
datasets4.3.3
docopt0.7.1
foreign0.8-86
graphics4.3.3
grDevices4.3.3
grid4.3.3
KernSmooth2.23-22
lattice0.22-5
littler0.3.20
MASS7.3-60.0.1
Matrix1.6-5
methods4.3.3
mgcv1.9-1
nlme3.1-164
nnet7.3-19
parallel4.3.3
rpart4.1.23
spatial7.3-17
splines4.3.3
stats4.3.3
stats44.3.3
survival3.5-8
tcltk4.3.3
tools4.3.3
utils4.3.3

apptainer-r/4.4

  • Python: -
  • R: 4.4.3
  • Pip packages: -
  • R packages: 31
  • Description: Not described yet.
Pip packages

No packages found in this inventory.

R packages
PackageVersion
base4.4.3
boot1.3-31
class7.3-23
cluster2.1.8
codetools0.2-20
compiler4.4.3
datasets4.4.3
docopt0.7.2
foreign0.8-88
graphics4.4.3
grDevices4.4.3
grid4.4.3
KernSmooth2.23-26
lattice0.22-6
littler0.3.21
MASS7.3-64
Matrix1.7-2
methods4.4.3
mgcv1.9-1
nlme3.1-167
nnet7.3-20
parallel4.4.3
rpart4.1.24
spatial7.3-18
splines4.4.3
stats4.4.3
stats44.4.3
survival3.8-3
tcltk4.4.3
tools4.4.3
utils4.4.3

apptainer-r/4.5

  • Python: -
  • R: 4.5.3
  • Pip packages: -
  • R packages: 31
  • Description: Not described yet.
Pip packages

No packages found in this inventory.

R packages
PackageVersion
base4.5.3
boot1.3-32
class7.3-23
cluster2.1.8.2
codetools0.2-20
compiler4.5.3
datasets4.5.3
docopt0.7.2
foreign0.8-91
graphics4.5.3
grDevices4.5.3
grid4.5.3
KernSmooth2.23-26
lattice0.22-9
littler0.3.23
MASS7.3-65
Matrix1.7-4
methods4.5.3
mgcv1.9-4
nlme3.1-168
nnet7.3-20
parallel4.5.3
rpart4.1.24
spatial7.3-18
splines4.5.3
stats4.5.3
stats44.5.3
survival3.8-6
tcltk4.5.3
tools4.5.3
utils4.5.3

apptainer-r/4.6

  • Python: -
  • R: 4.6.0
  • Pip packages: -
  • R packages: 31
  • Description: Not described yet.
Pip packages

No packages found in this inventory.

R packages
PackageVersion
base4.6.0
boot1.3-32
class7.3-23
cluster2.1.8.2
codetools0.2-20
compiler4.6.0
datasets4.6.0
docopt0.7.2
foreign0.8-91
graphics4.6.0
grDevices4.6.0
grid4.6.0
KernSmooth2.23-26
lattice0.22-9
littler0.3.23
MASS7.3-65
Matrix1.7-5
methods4.6.0
mgcv1.9-4
nlme3.1-169
nnet7.3-20
parallel4.6.0
rpart4.1.27
spatial7.3-18
splines4.6.0
stats4.6.0
stats44.6.0
survival3.8-6
tcltk4.6.0
tools4.6.0
utils4.6.0

apptainer-rig/latest

  • Python: -
  • R: 4.6.0
  • Pip packages: -
  • R packages: 30
  • Description: Not described yet.
Pip packages

No packages found in this inventory.

R packages
PackageVersion
base4.6.0
boot1.3-32
class7.3-23
cluster2.1.8.2
codetools0.2-20
compiler4.6.0
datasets4.6.0
foreign0.8-91
graphics4.6.0
grDevices4.6.0
grid4.6.0
KernSmooth2.23-26
lattice0.22-9
MASS7.3-65
Matrix1.7-5
methods4.6.0
mgcv1.9-4
nlme3.1-169
nnet7.3-20
pak0.9.5.9000
parallel4.6.0
rpart4.1.27
spatial7.3-18
splines4.6.0
stats4.6.0
stats44.6.0
survival3.8-6
tcltk4.6.0
tools4.6.0
utils4.6.0

apptainer-rstudio-server/4.5

  • Python: -
  • R: 4.5.3
  • Pip packages: -
  • R packages: 31
  • Description: RStudio Server container for browser-based R 4.5 interactive analysis sessions.
Pip packages

No packages found in this inventory.

R packages
PackageVersion
base4.5.3
boot1.3-32
class7.3-23
cluster2.1.8.2
codetools0.2-20
compiler4.5.3
datasets4.5.3
docopt0.7.2
foreign0.8-91
graphics4.5.3
grDevices4.5.3
grid4.5.3
KernSmooth2.23-26
lattice0.22-9
littler0.3.22
MASS7.3-65
Matrix1.7-4
methods4.5.3
mgcv1.9-4
nlme3.1-168
nnet7.3-20
parallel4.5.3
rpart4.1.24
spatial7.3-18
splines4.5.3
stats4.5.3
stats44.5.3
survival3.8-6
tcltk4.5.3
tools4.5.3
utils4.5.3

apptainer-rstudio-server/4.6

  • Python: -
  • R: 4.6.0
  • Pip packages: -
  • R packages: 31
  • Description: RStudio Server container for browser-based R 4.6 interactive analysis sessions.
Pip packages

No packages found in this inventory.

R packages
PackageVersion
base4.6.0
boot1.3-32
class7.3-23
cluster2.1.8.2
codetools0.2-20
compiler4.6.0
datasets4.6.0
docopt0.7.2
foreign0.8-91
graphics4.6.0
grDevices4.6.0
grid4.6.0
KernSmooth2.23-26
lattice0.22-9
littler0.3.23
MASS7.3-65
Matrix1.7-5
methods4.6.0
mgcv1.9-4
nlme3.1-169
nnet7.3-20
parallel4.6.0
rpart4.1.27
spatial7.3-18
splines4.6.0
stats4.6.0
stats44.6.0
survival3.8-6
tcltk4.6.0
tools4.6.0
utils4.6.0

apptainer-tensorflow/latest-gpu

  • Python: 3.11.15
  • R: -
  • Pip packages: -
  • R packages: -
  • Description: GPU-enabled TensorFlow container for deep learning training, inference, and neural network workflows.
Pip packages

No packages found in this inventory.

R packages

No packages found in this inventory.

apptainer-tidyverse/4.5

  • Python: -
  • R: 4.5.3
  • Pip packages: -
  • R packages: 184
  • Description: Tidyverse container for R data wrangling, visualization, reporting, and statistical analysis.
Pip packages

No packages found in this inventory.

R packages
PackageVersion
arrow23.0.1.1
askpass1.2.1
assertthat0.2.1
backports1.5.0
base4.5.3
base64enc0.1-6
BiocManager1.30.27
bit4.6.0
bit644.6.0-1
blob1.3.0
boot1.3-32
brew1.0-10
brio1.1.5
broom1.0.12
bslib0.10.0
cachem1.1.0
callr3.7.6
cellranger1.1.0
class7.3-23
cli3.6.5
clipr0.8.0
cluster2.1.8.2
codetools0.2-20
commonmark2.0.0
compiler4.5.3
conflicted1.2.0
cpp110.5.3
crayon1.5.3
credentials2.0.3
curl7.0.0
data.table1.18.2.1
datasets4.5.3
DBI1.3.0
dbplyr2.5.2
desc1.4.3
devtools2.4.6
diffobj0.3.6
digest0.6.39
docopt0.7.2
downlit0.4.5
dplyr1.2.0
dtplyr1.3.3
duckdb1.4.4
ellipsis0.3.2
evaluate1.0.5
fansi1.0.7
farver2.1.2
fastmap1.2.0
fontawesome0.5.3
forcats1.0.1
foreign0.8-91
fs1.6.7
fst0.9.8
fstcore0.10.0
gargle1.6.1
generics0.1.4
gert2.3.1
ggplot24.0.2
gh1.5.0
gitcreds0.1.2
glue1.8.0
googledrive2.1.2
googlesheets41.1.2
graphics4.5.3
grDevices4.5.3
grid4.5.3
gtable0.3.6
haven2.5.5
highr0.12
hms1.1.4
htmltools0.5.9
htmlwidgets1.6.4
httpuv1.6.16
httr1.4.8
httr21.2.2
ids1.0.1
ini0.3.1
isoband0.3.0
jquerylib0.1.4
jsonlite2.0.0
KernSmooth2.23-26
knitr1.51
labeling0.4.3
Lahman14.0-0
later1.4.8
lattice0.22-9
lifecycle1.0.5
littler0.3.22
lubridate1.9.5
magrittr2.0.4
MASS7.3-65
Matrix1.7-4
memoise2.0.1
methods4.5.3
mgcv1.9-4
mime0.13
miniUI0.1.2
modelr0.1.11
nlme3.1-168
nnet7.3-20
nycflights131.0.2
openssl2.3.5
otel0.2.0
parallel4.5.3
pillar1.11.1
pkgbuild1.4.8
pkgconfig2.0.3
pkgdown2.2.0
pkgload1.5.0
praise1.0.0
prettyunits1.2.0
processx3.8.6
profvis0.4.0
progress1.2.3
promises1.5.0
ps1.9.1
purrr1.2.1
R62.6.1
ragg1.5.1
rappdirs0.3.4
rcmdcheck1.4.0
RColorBrewer1.1-3
Rcpp1.1.1
readr2.2.0
readxl1.4.5
rematch2.0.0
rematch22.1.2
remotes2.5.0
reprex2.1.1
rlang1.1.7
RMariaDB1.3.5
rmarkdown2.30
roxygen27.3.3
rpart4.1.24
RPostgres1.4.10
rprojroot2.1.1
RSQLite2.4.6
rstudioapi0.18.0
rversions3.0.0
rvest1.0.5
S70.2.1
sass0.4.10
scales1.4.0
selectr0.5-1
sessioninfo1.2.3
shiny1.13.0
sourcetools0.1.7-1
spatial7.3-18
splines4.5.3
stats4.5.3
stats44.5.3
stringi1.8.7
stringr1.6.0
survival3.8-6
sys3.4.3
systemfonts1.3.2
tcltk4.5.3
testthat3.3.2
textshaping1.0.5
tibble3.3.1
tidyr1.3.2
tidyselect1.2.1
tidyverse2.0.0
timechange0.4.0
tinytex0.58
tools4.5.3
tzdb0.5.0
urlchecker1.0.1
usethis3.2.1
utf81.2.6
utils4.5.3
uuid1.2-2
vctrs0.7.1
viridisLite0.4.3
vroom1.7.0
waldo0.6.2
whisker0.4.1
withr3.0.2
xfun0.56
xml21.5.2
xopen1.0.1
xtable1.8-8
yaml2.3.12
zip2.3.3